Index A | C | D | E | F | G | H | I | M | N | P | R | S | T | U A add_ab_02_005_data() (in module cagey.reactions) add_ab_02_007_data() (in module cagey.reactions) add_ab_02_009_data() (in module cagey.reactions) add_precursors() (in module cagey.reactions) adduct (cagey.MassSpectrumPeak attribute) aldehyde_peaks (cagey.NmrSpectrum attribute) aldehyde_peaks_df() (in module cagey.queries) amplitude (cagey.NmrPeak attribute) C cagey module cagey.ms module cagey.nmr module cagey.queries module cagey.reactions module cagey.turbidity module calculated_mz (cagey.MassSpectrumPeak attribute) charge (cagey.MassSpectrumPeak attribute) create_tables() (in module cagey.queries) CreateTablesError D di_count (cagey.MassSpectrumPeak attribute) di_name (cagey.Reaction attribute) di_smiles (cagey.Precursors attribute) DISSOLVED (cagey.TurbidState attribute) E experiment (cagey.Reaction attribute) (cagey.ReactionKey attribute) F formulation_number (cagey.Reaction attribute) (cagey.ReactionKey attribute) from_json_file() (cagey.ReactionKey static method) from_ms_path() (cagey.ReactionKey static method) from_title_file() (cagey.ReactionKey static method) G get_aggregated_stability_windows() (in module cagey.turbidity) get_peaks() (in module cagey.ms) get_spectrum() (in module cagey.nmr) get_stability_windows() (in module cagey.turbidity) get_topologies() (in module cagey.ms) get_turbid_state() (in module cagey.turbidity) H has_ppm() (cagey.NmrPeak method) I id (cagey.Row attribute) imine_peaks (cagey.NmrSpectrum attribute) imine_peaks_df() (in module cagey.queries) in_range() (cagey.NmrPeak method) insert_mass_spectrum() (in module cagey.queries) insert_mass_spectrum_topology_assignments() (in module cagey.queries) insert_nmr_spectrum() (in module cagey.queries) insert_precursors() (in module cagey.queries) insert_reactions() (in module cagey.queries) insert_turbidity() (in module cagey.queries) InsertMassSpectrumError InsertNmrSpectrumError intensity (cagey.MassSpectrumPeak attribute) item (cagey.Row attribute) M machine_data_to_mzml() (in module cagey.ms) mass_spectrum_peak_id (cagey.MassSpectrumTopologyAssignment attribute) mass_spectrum_peaks() (in module cagey.queries) mass_spectrum_peaks_df() (in module cagey.queries) mass_spectrum_topology_assignments_df() (in module cagey.queries) MassSpectrumPeak (class in cagey) MassSpectrumTopologyAssignment (class in cagey) module cagey cagey.ms cagey.nmr cagey.queries cagey.reactions cagey.turbidity mzml_to_csv() (in module cagey.ms) N name (cagey.Precursor attribute) NmrPeak (class in cagey) NmrSpectrum (class in cagey) P plate (cagey.Reaction attribute) (cagey.ReactionKey attribute) ppm (cagey.NmrPeak attribute) Precursor (class in cagey) Precursors (class in cagey) precursors_df() (in module cagey.queries) R Reaction (class in cagey) reaction_precursors() (in module cagey.queries) ReactionKey (class in cagey) reactions_df() (in module cagey.queries) Row (class in cagey) S separation_mz (cagey.MassSpectrumPeak attribute) smiles (cagey.Precursor attribute) spectrum_mz (cagey.MassSpectrumPeak attribute) T topology (cagey.MassSpectrumTopologyAssignment attribute) tri_count (cagey.MassSpectrumPeak attribute) tri_name (cagey.Reaction attribute) tri_smiles (cagey.Precursors attribute) TURBID (cagey.TurbidState attribute) turbidity_dissolved_references_df() (in module cagey.queries) turbidity_measurements_df() (in module cagey.queries) turbidity_states_df() (in module cagey.queries) TurbidState (class in cagey) U UNSTABLE (cagey.TurbidState attribute)